From e3a71074b8f12a6f5d1f690b337f49f661b0b4f6 Mon Sep 17 00:00:00 2001
From: Zachary Billman <zacharypbillman@protonmail.com>
Date: Sun, 12 Jun 2022 20:19:17 -0400
Subject: [PATCH] Added basic analysis of iris dataset with AOG.

---
 2022-06-12_iris/Iris.csv    |  151 ++++
 2022-06-12_iris/iris_fun.jl | 1401 +++++++++++++++++++++++++++++++++++
 2 files changed, 1552 insertions(+)
 create mode 100644 2022-06-12_iris/Iris.csv
 create mode 100644 2022-06-12_iris/iris_fun.jl

diff --git a/2022-06-12_iris/Iris.csv b/2022-06-12_iris/Iris.csv
new file mode 100644
index 0000000..1bf42f2
--- /dev/null
+++ b/2022-06-12_iris/Iris.csv
@@ -0,0 +1,151 @@
+Id,SepalLengthCm,SepalWidthCm,PetalLengthCm,PetalWidthCm,Species
+1,5.1,3.5,1.4,0.2,Iris-setosa
+2,4.9,3.0,1.4,0.2,Iris-setosa
+3,4.7,3.2,1.3,0.2,Iris-setosa
+4,4.6,3.1,1.5,0.2,Iris-setosa
+5,5.0,3.6,1.4,0.2,Iris-setosa
+6,5.4,3.9,1.7,0.4,Iris-setosa
+7,4.6,3.4,1.4,0.3,Iris-setosa
+8,5.0,3.4,1.5,0.2,Iris-setosa
+9,4.4,2.9,1.4,0.2,Iris-setosa
+10,4.9,3.1,1.5,0.1,Iris-setosa
+11,5.4,3.7,1.5,0.2,Iris-setosa
+12,4.8,3.4,1.6,0.2,Iris-setosa
+13,4.8,3.0,1.4,0.1,Iris-setosa
+14,4.3,3.0,1.1,0.1,Iris-setosa
+15,5.8,4.0,1.2,0.2,Iris-setosa
+16,5.7,4.4,1.5,0.4,Iris-setosa
+17,5.4,3.9,1.3,0.4,Iris-setosa
+18,5.1,3.5,1.4,0.3,Iris-setosa
+19,5.7,3.8,1.7,0.3,Iris-setosa
+20,5.1,3.8,1.5,0.3,Iris-setosa
+21,5.4,3.4,1.7,0.2,Iris-setosa
+22,5.1,3.7,1.5,0.4,Iris-setosa
+23,4.6,3.6,1.0,0.2,Iris-setosa
+24,5.1,3.3,1.7,0.5,Iris-setosa
+25,4.8,3.4,1.9,0.2,Iris-setosa
+26,5.0,3.0,1.6,0.2,Iris-setosa
+27,5.0,3.4,1.6,0.4,Iris-setosa
+28,5.2,3.5,1.5,0.2,Iris-setosa
+29,5.2,3.4,1.4,0.2,Iris-setosa
+30,4.7,3.2,1.6,0.2,Iris-setosa
+31,4.8,3.1,1.6,0.2,Iris-setosa
+32,5.4,3.4,1.5,0.4,Iris-setosa
+33,5.2,4.1,1.5,0.1,Iris-setosa
+34,5.5,4.2,1.4,0.2,Iris-setosa
+35,4.9,3.1,1.5,0.1,Iris-setosa
+36,5.0,3.2,1.2,0.2,Iris-setosa
+37,5.5,3.5,1.3,0.2,Iris-setosa
+38,4.9,3.1,1.5,0.1,Iris-setosa
+39,4.4,3.0,1.3,0.2,Iris-setosa
+40,5.1,3.4,1.5,0.2,Iris-setosa
+41,5.0,3.5,1.3,0.3,Iris-setosa
+42,4.5,2.3,1.3,0.3,Iris-setosa
+43,4.4,3.2,1.3,0.2,Iris-setosa
+44,5.0,3.5,1.6,0.6,Iris-setosa
+45,5.1,3.8,1.9,0.4,Iris-setosa
+46,4.8,3.0,1.4,0.3,Iris-setosa
+47,5.1,3.8,1.6,0.2,Iris-setosa
+48,4.6,3.2,1.4,0.2,Iris-setosa
+49,5.3,3.7,1.5,0.2,Iris-setosa
+50,5.0,3.3,1.4,0.2,Iris-setosa
+51,7.0,3.2,4.7,1.4,Iris-versicolor
+52,6.4,3.2,4.5,1.5,Iris-versicolor
+53,6.9,3.1,4.9,1.5,Iris-versicolor
+54,5.5,2.3,4.0,1.3,Iris-versicolor
+55,6.5,2.8,4.6,1.5,Iris-versicolor
+56,5.7,2.8,4.5,1.3,Iris-versicolor
+57,6.3,3.3,4.7,1.6,Iris-versicolor
+58,4.9,2.4,3.3,1.0,Iris-versicolor
+59,6.6,2.9,4.6,1.3,Iris-versicolor
+60,5.2,2.7,3.9,1.4,Iris-versicolor
+61,5.0,2.0,3.5,1.0,Iris-versicolor
+62,5.9,3.0,4.2,1.5,Iris-versicolor
+63,6.0,2.2,4.0,1.0,Iris-versicolor
+64,6.1,2.9,4.7,1.4,Iris-versicolor
+65,5.6,2.9,3.6,1.3,Iris-versicolor
+66,6.7,3.1,4.4,1.4,Iris-versicolor
+67,5.6,3.0,4.5,1.5,Iris-versicolor
+68,5.8,2.7,4.1,1.0,Iris-versicolor
+69,6.2,2.2,4.5,1.5,Iris-versicolor
+70,5.6,2.5,3.9,1.1,Iris-versicolor
+71,5.9,3.2,4.8,1.8,Iris-versicolor
+72,6.1,2.8,4.0,1.3,Iris-versicolor
+73,6.3,2.5,4.9,1.5,Iris-versicolor
+74,6.1,2.8,4.7,1.2,Iris-versicolor
+75,6.4,2.9,4.3,1.3,Iris-versicolor
+76,6.6,3.0,4.4,1.4,Iris-versicolor
+77,6.8,2.8,4.8,1.4,Iris-versicolor
+78,6.7,3.0,5.0,1.7,Iris-versicolor
+79,6.0,2.9,4.5,1.5,Iris-versicolor
+80,5.7,2.6,3.5,1.0,Iris-versicolor
+81,5.5,2.4,3.8,1.1,Iris-versicolor
+82,5.5,2.4,3.7,1.0,Iris-versicolor
+83,5.8,2.7,3.9,1.2,Iris-versicolor
+84,6.0,2.7,5.1,1.6,Iris-versicolor
+85,5.4,3.0,4.5,1.5,Iris-versicolor
+86,6.0,3.4,4.5,1.6,Iris-versicolor
+87,6.7,3.1,4.7,1.5,Iris-versicolor
+88,6.3,2.3,4.4,1.3,Iris-versicolor
+89,5.6,3.0,4.1,1.3,Iris-versicolor
+90,5.5,2.5,4.0,1.3,Iris-versicolor
+91,5.5,2.6,4.4,1.2,Iris-versicolor
+92,6.1,3.0,4.6,1.4,Iris-versicolor
+93,5.8,2.6,4.0,1.2,Iris-versicolor
+94,5.0,2.3,3.3,1.0,Iris-versicolor
+95,5.6,2.7,4.2,1.3,Iris-versicolor
+96,5.7,3.0,4.2,1.2,Iris-versicolor
+97,5.7,2.9,4.2,1.3,Iris-versicolor
+98,6.2,2.9,4.3,1.3,Iris-versicolor
+99,5.1,2.5,3.0,1.1,Iris-versicolor
+100,5.7,2.8,4.1,1.3,Iris-versicolor
+101,6.3,3.3,6.0,2.5,Iris-virginica
+102,5.8,2.7,5.1,1.9,Iris-virginica
+103,7.1,3.0,5.9,2.1,Iris-virginica
+104,6.3,2.9,5.6,1.8,Iris-virginica
+105,6.5,3.0,5.8,2.2,Iris-virginica
+106,7.6,3.0,6.6,2.1,Iris-virginica
+107,4.9,2.5,4.5,1.7,Iris-virginica
+108,7.3,2.9,6.3,1.8,Iris-virginica
+109,6.7,2.5,5.8,1.8,Iris-virginica
+110,7.2,3.6,6.1,2.5,Iris-virginica
+111,6.5,3.2,5.1,2.0,Iris-virginica
+112,6.4,2.7,5.3,1.9,Iris-virginica
+113,6.8,3.0,5.5,2.1,Iris-virginica
+114,5.7,2.5,5.0,2.0,Iris-virginica
+115,5.8,2.8,5.1,2.4,Iris-virginica
+116,6.4,3.2,5.3,2.3,Iris-virginica
+117,6.5,3.0,5.5,1.8,Iris-virginica
+118,7.7,3.8,6.7,2.2,Iris-virginica
+119,7.7,2.6,6.9,2.3,Iris-virginica
+120,6.0,2.2,5.0,1.5,Iris-virginica
+121,6.9,3.2,5.7,2.3,Iris-virginica
+122,5.6,2.8,4.9,2.0,Iris-virginica
+123,7.7,2.8,6.7,2.0,Iris-virginica
+124,6.3,2.7,4.9,1.8,Iris-virginica
+125,6.7,3.3,5.7,2.1,Iris-virginica
+126,7.2,3.2,6.0,1.8,Iris-virginica
+127,6.2,2.8,4.8,1.8,Iris-virginica
+128,6.1,3.0,4.9,1.8,Iris-virginica
+129,6.4,2.8,5.6,2.1,Iris-virginica
+130,7.2,3.0,5.8,1.6,Iris-virginica
+131,7.4,2.8,6.1,1.9,Iris-virginica
+132,7.9,3.8,6.4,2.0,Iris-virginica
+133,6.4,2.8,5.6,2.2,Iris-virginica
+134,6.3,2.8,5.1,1.5,Iris-virginica
+135,6.1,2.6,5.6,1.4,Iris-virginica
+136,7.7,3.0,6.1,2.3,Iris-virginica
+137,6.3,3.4,5.6,2.4,Iris-virginica
+138,6.4,3.1,5.5,1.8,Iris-virginica
+139,6.0,3.0,4.8,1.8,Iris-virginica
+140,6.9,3.1,5.4,2.1,Iris-virginica
+141,6.7,3.1,5.6,2.4,Iris-virginica
+142,6.9,3.1,5.1,2.3,Iris-virginica
+143,5.8,2.7,5.1,1.9,Iris-virginica
+144,6.8,3.2,5.9,2.3,Iris-virginica
+145,6.7,3.3,5.7,2.5,Iris-virginica
+146,6.7,3.0,5.2,2.3,Iris-virginica
+147,6.3,2.5,5.0,1.9,Iris-virginica
+148,6.5,3.0,5.2,2.0,Iris-virginica
+149,6.2,3.4,5.4,2.3,Iris-virginica
+150,5.9,3.0,5.1,1.8,Iris-virginica
diff --git a/2022-06-12_iris/iris_fun.jl b/2022-06-12_iris/iris_fun.jl
new file mode 100644
index 0000000..b034489
--- /dev/null
+++ b/2022-06-12_iris/iris_fun.jl
@@ -0,0 +1,1401 @@
+### A Pluto.jl notebook ###
+# v0.19.8
+
+using Markdown
+using InteractiveUtils
+
+# ╔═╡ 9f49a58e-ea91-11ec-2ff0-1d0e22ed1ac8
+using DataFrames, CSV, Statistics
+
+# ╔═╡ d64ac3c4-fe01-4ef4-8b2c-9bd39209a068
+using AlgebraOfGraphics, CairoMakie
+
+# ╔═╡ 722cb824-4f24-45c2-a9a9-5f8adaccddec
+dataset = "Iris.csv"
+
+# ╔═╡ 6d9d73dc-4325-4f62-a301-27ac5a0c3929
+function gen_iris_df()
+	path = dataset
+	CSV.read(dataset, DataFrame)
+end
+
+# ╔═╡ 068bba4e-d606-4c19-85e8-16a810aa8f1e
+df = gen_iris_df()
+
+# ╔═╡ a9f9a162-eaa4-4736-9ea4-233e76600872
+df[:, :SepalWidthCm]
+
+# ╔═╡ 06fd09a1-7352-4d94-b793-ec8c9b3de405
+unique(df[!, :Species])
+
+# ╔═╡ e694c97a-6261-42a9-8740-1827c6a7697b
+filter(x -> x[:Species] == "Iris-setosa", df)
+
+# ╔═╡ 890a2133-6352-450d-8bfd-fa2b9ce4f540
+filter(row -> row[:Species] ∈ ["Iris-setosa", "Iris-virginica"], df)
+
+# ╔═╡ bb1cf364-f878-4738-892b-841163ac1a0a
+df[df[!, :Species] .== "Iris-setosa", :]
+
+# ╔═╡ 7294e6a6-78e0-4b88-9d90-2b927973a980
+filter(:Species => ==("Iris-setosa"), df)
+
+# ╔═╡ c0892c44-b105-4ef0-b309-b44898c9134f
+describe(df)
+
+# ╔═╡ e0793ad3-ed94-4172-8f6b-3b2b80c1c01d
+transform!(df, [:SepalLengthCm, :SepalWidthCm] => (.*) => :SepalAreaCm)
+
+# ╔═╡ a3747666-115e-450b-b3de-cc119ae6ea2d
+transform!(df, [:PetalLengthCm, :PetalWidthCm] => (.*) => :PetalAreaCm)
+
+# ╔═╡ 5bcacbd5-bbc7-4746-930c-d5350626449d
+gdf = groupby(df, :Species)
+
+# ╔═╡ e279e198-6ded-4ca8-9dd1-a83c0224d82f
+combine(gdf, :SepalAreaCm => mean, :PetalAreaCm => mean)
+
+# ╔═╡ b9dfc820-29f3-4952-a22e-842fc4dd6c85
+num_names = names(df, Not(["Id", "Species"]))
+
+# ╔═╡ 96366db4-68ff-4526-bd2d-a59c33d24e86
+minimum(df.SepalLengthCm)
+
+# ╔═╡ afadf83c-7770-48bc-bc53-897cd09aef77
+combine(gdf, num_names .=> mean)
+
+# ╔═╡ b2f06553-5858-4f39-b35c-7f35dfd2d95d
+combine(gdf, num_names .=> minimum)
+
+# ╔═╡ 3deea763-c7ff-4c32-b87b-b1394ad6e2ba
+combine(gdf, num_names .=> maximum)
+
+# ╔═╡ d6242a4a-5847-4d3b-9b35-4a7618c3651f
+combine(gdf, num_names .=> median)
+
+# ╔═╡ 696e84d0-d67e-4b2c-ad2d-178219dab473
+set_aog_theme!()
+
+# ╔═╡ 724b995b-254a-4900-b749-be72c4d5df6c
+axis = (width = 400, height = 400)
+
+# ╔═╡ 93d4283f-bc4b-4dce-861b-ff1e55bb0d14
+flower_freq = data(df) * frequency() * mapping(:Species)
+
+# ╔═╡ 09aa57aa-3555-4560-a8aa-d221f9466e51
+draw(flower_freq; axis)
+
+# ╔═╡ ab5c8178-8cf8-4c49-b465-f84d2680342d
+petals = data(df) * mapping(:PetalWidthCm => "Petal Width (cm)", :PetalLengthCm => "Petal Length (cm)")
+
+# ╔═╡ 9c95c89a-7e85-42c6-913f-51b94b1bb412
+draw(petals; axis)
+
+# ╔═╡ 157435a2-fa65-4ade-8afa-45a32e72bdf8
+petal_color = petals * mapping(color = :Species)
+
+# ╔═╡ 647ac8ec-f07f-43d4-af8e-a16f19ba36fb
+draw(petal_color; axis)
+
+# ╔═╡ 3da10000-0788-4b25-aca9-bc0afcaa62bf
+contours = AlgebraOfGraphics.density() * visual(Contour)
+
+# ╔═╡ 6c8237e6-3003-4f29-990e-a04b62f4c6b2
+petal_contours = petals * contours * mapping(color = :Species)
+
+# ╔═╡ dd1b708b-e55c-4275-8a18-6c366a4f6816
+draw(petal_contours; axis)
+
+# ╔═╡ 2632c6f8-e37e-4642-b46c-fe89a72fa364
+f = draw(petal_contours; axis=(; limits=(-0.1, 3, 0, 8)))
+
+# ╔═╡ 00000000-0000-0000-0000-000000000001
+PLUTO_PROJECT_TOML_CONTENTS = """
+[deps]
+AlgebraOfGraphics = "cbdf2221-f076-402e-a563-3d30da359d67"
+CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+
+[compat]
+AlgebraOfGraphics = "~0.6.7"
+CSV = "~0.10.4"
+CairoMakie = "~0.8.5"
+DataFrames = "~1.3.4"
+"""
+
+# ╔═╡ 00000000-0000-0000-0000-000000000002
+PLUTO_MANIFEST_TOML_CONTENTS = """
+# This file is machine-generated - editing it directly is not advised
+
+julia_version = "1.7.2"
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+
+[[deps.AbstractFFTs]]
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+
+[[deps.TiffImages]]
+deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
+git-tree-sha1 = "f90022b44b7bf97952756a6b6737d1a0024a3233"
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+[[deps.UUIDs]]
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+
+[[deps.Unicode]]
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+
+[[deps.UnicodeFun]]
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+[[deps.WeakRefStrings]]
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+[[deps.WoodburyMatrices]]
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+[[deps.XML2_jll]]
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+git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff"
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+
+[[deps.XSLT_jll]]
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+git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
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+[[deps.Xorg_libX11_jll]]
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+git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
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+
+[[deps.Xorg_libXau_jll]]
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+
+[[deps.Xorg_libXdmcp_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4"
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+
+[[deps.Xorg_libXext_jll]]
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+git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3"
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+
+[[deps.Xorg_libXrender_jll]]
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+git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96"
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+[[deps.Xorg_libpthread_stubs_jll]]
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+[[deps.Xorg_libxcb_jll]]
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+git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6"
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+[[deps.Xorg_xtrans_jll]]
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+[[deps.Zlib_jll]]
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+
+[[deps.isoband_jll]]
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+[[deps.libass_jll]]
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+[[deps.libblastrampoline_jll]]
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+
+[[deps.libfdk_aac_jll]]
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+
+[[deps.libpng_jll]]
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+[[deps.libsixel_jll]]
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+
+[[deps.libvorbis_jll]]
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+
+[[deps.nghttp2_jll]]
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+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+
+[[deps.p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
+
+[[deps.x264_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
+uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
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+
+[[deps.x265_jll]]
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+git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9"
+uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
+version = "3.5.0+0"
+"""
+
+# ╔═╡ Cell order:
+# ╠═9f49a58e-ea91-11ec-2ff0-1d0e22ed1ac8
+# ╠═722cb824-4f24-45c2-a9a9-5f8adaccddec
+# ╠═6d9d73dc-4325-4f62-a301-27ac5a0c3929
+# ╠═068bba4e-d606-4c19-85e8-16a810aa8f1e
+# ╠═a9f9a162-eaa4-4736-9ea4-233e76600872
+# ╠═06fd09a1-7352-4d94-b793-ec8c9b3de405
+# ╠═e694c97a-6261-42a9-8740-1827c6a7697b
+# ╠═890a2133-6352-450d-8bfd-fa2b9ce4f540
+# ╠═bb1cf364-f878-4738-892b-841163ac1a0a
+# ╠═7294e6a6-78e0-4b88-9d90-2b927973a980
+# ╠═c0892c44-b105-4ef0-b309-b44898c9134f
+# ╠═e0793ad3-ed94-4172-8f6b-3b2b80c1c01d
+# ╠═a3747666-115e-450b-b3de-cc119ae6ea2d
+# ╠═5bcacbd5-bbc7-4746-930c-d5350626449d
+# ╠═e279e198-6ded-4ca8-9dd1-a83c0224d82f
+# ╠═b9dfc820-29f3-4952-a22e-842fc4dd6c85
+# ╠═96366db4-68ff-4526-bd2d-a59c33d24e86
+# ╠═afadf83c-7770-48bc-bc53-897cd09aef77
+# ╠═b2f06553-5858-4f39-b35c-7f35dfd2d95d
+# ╠═3deea763-c7ff-4c32-b87b-b1394ad6e2ba
+# ╠═d6242a4a-5847-4d3b-9b35-4a7618c3651f
+# ╠═d64ac3c4-fe01-4ef4-8b2c-9bd39209a068
+# ╠═696e84d0-d67e-4b2c-ad2d-178219dab473
+# ╠═724b995b-254a-4900-b749-be72c4d5df6c
+# ╠═93d4283f-bc4b-4dce-861b-ff1e55bb0d14
+# ╠═09aa57aa-3555-4560-a8aa-d221f9466e51
+# ╠═ab5c8178-8cf8-4c49-b465-f84d2680342d
+# ╠═9c95c89a-7e85-42c6-913f-51b94b1bb412
+# ╠═157435a2-fa65-4ade-8afa-45a32e72bdf8
+# ╠═647ac8ec-f07f-43d4-af8e-a16f19ba36fb
+# ╠═3da10000-0788-4b25-aca9-bc0afcaa62bf
+# ╠═6c8237e6-3003-4f29-990e-a04b62f4c6b2
+# ╠═dd1b708b-e55c-4275-8a18-6c366a4f6816
+# ╠═2632c6f8-e37e-4642-b46c-fe89a72fa364
+# ╟─00000000-0000-0000-0000-000000000001
+# ╟─00000000-0000-0000-0000-000000000002