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<title>About me. 👋 | Zachary Billman</title>
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My name is Zachary Billman. I’m an MD-PhD student at UNC Chapel Hill in Ed Miao’s lab. The curious reader may be thinking: “But Zach, Ed Miao’s lab is at Duke now! What does that make you?” What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke.
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This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused.
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This makes for very interesting basketball viewing parties with my Duke friends!">
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My name is Zachary Billman. I’m an MD-PhD student at UNC Chapel Hill in Ed Miao’s lab. The curious reader may be thinking: “But Zach, Ed Miao’s lab is at Duke now! What does that make you?” What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke.
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This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused.
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This makes for very interesting basketball viewing parties with my Duke friends!" />
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My name is Zachary Billman. I’m an MD-PhD student at UNC Chapel Hill in Ed Miao’s lab. The curious reader may be thinking: “But Zach, Ed Miao’s lab is at Duke now! What does that make you?” What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke.
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This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused.
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This makes for very interesting basketball viewing parties with my Duke friends!"/>
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<h1 class="post-title entry-hint-parent">
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About me. 👋
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</h1>
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<div class="post-meta"><span title='2022-04-03 00:00:00 +0000 UTC'>Sunday, April 3, 2022</span> · 3 min · Zachary Billman
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<div class="post-content"><h2 id="welcome-to-my-site">Welcome to my site!<a hidden class="anchor" aria-hidden="true" href="#welcome-to-my-site">#</a></h2>
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<p>My name is Zachary Billman. I’m an MD-PhD student at UNC Chapel Hill in Ed Miao’s lab. The curious reader may be thinking: “But Zach, Ed Miao’s lab is at Duke now! What does that make you?” What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke.
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<span class="sidenote-number"><small class="sidenote">
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This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused.
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</small></span>
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This makes for very interesting basketball viewing parties with my Duke friends!</p>
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<h2 id="my-research-and-scientific-interests-dot">My research and scientific interests.<a hidden class="anchor" aria-hidden="true" href="#my-research-and-scientific-interests-dot">#</a></h2>
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<p>I am broadly interested in innate immunology. I am in the 4th year of my PhD studying the host-pathogen interaction between the intracellular fungus <em>Histoplasma capsulatum</em> and macrophages. There are many unstudied curiosities regarding the innate immune response to <em>Histoplasma spp.</em> and other intracellular fungi that I think are quite interesting. Stay tuned, hopefully there is a major breakthrough to report here someday.</p>
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<h2 id="hobbies-i-may-write-about-dot">Hobbies I may write about.<a hidden class="anchor" aria-hidden="true" href="#hobbies-i-may-write-about-dot">#</a></h2>
|
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<p>Besides my science, I am interested in birding, baking sourdough bread (I swear I began years before the pandemic, though hearing of people baking bread brings me joy no matter when they first began!), board games, roasting coffee, and self-hosting free and open source software. Over the course of the pandemic, I have learned how to maintain a basic suite of services on a server I rent that have replaced my need for Google Photos and Google Drive.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
I’m hoping to be able to move away from these platforms entirely soon. I think they provide a great service, but at a substantial cost to privacy. Hopefully more to be said about my thoughts on FOSS soon!
|
||||
</small></span>
|
||||
I also transitioned my old, (and quite frankly, embarassingly slow) managed Wordpress site with this lean, static site made in Hugo that I host myself. Now that I have mangled together some CSS to get my precious sidenotes up and running again, I’m ready to begin putting some ideas to paper.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
I love marginalia. I’m not sure if this is unique to me, but I seem to get caught up in parenthetical / tangential thoughts very often, and I think using an <a href="https://www.edwardtufte.com/bboard/q-and-a-fetch-msg?msg_id=0000ld">Edward Tufte-esque</a> sidenote is a great way for me to communicate in this way without distracting the reader too much. It seems<a href="https://en.wikipedia.org/wiki/Marginalia"> marginalia</a> such as this have been used throughout history, so perhaps it is normal, but most people can keep their thoughts focused better than me. The implementation I use is inspired by the <a href="https://github.com/edwardtufte/tufte-css">Tufte CSS project</a> and largely taken from <a href="https://scripter.co/sidenotes-using-only-css/">this incredibly helpful post found at scripter.co</a>.
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</small></span>
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I’m quite proud of my progress in administering my server and self-hosting useful services.</p>
|
||||
<h2 id="the-future-of-this-site-dot">The future of this site.<a hidden class="anchor" aria-hidden="true" href="#the-future-of-this-site-dot">#</a></h2>
|
||||
<p>On this site I plan to post updates about my journey through med school, grad school, and self-hosting I would like to share with the world. I have been helped immensely by many others’ advice and I hope to impart similar tips to others someday. I suspect most posts will be about much lighter fare, like whatever hobbies tickle my fancy at the time.</p>
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Posts
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<p>Welcome to my site! My name is Zachary Billman. I’m an MD-PhD student at UNC Chapel Hill in Ed Miao’s lab. The curious reader may be thinking: “But Zach, Ed Miao’s lab is at Duke now! What does that make you?” What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke. This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused. This makes for very interesting basketball viewing parties with my Duke friends!
|
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...</p>
|
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<footer class="entry-footer"><span title='2022-04-03 00:00:00 +0000 UTC'>Sunday, April 3, 2022</span> · 3 min · Zachary Billman</footer>
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<a class="entry-link" aria-label="post link to About me. 👋" href="https://www.zacharybillman.com/posts/about-me/"></a>
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|
||||
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||||
<article class="post-entry">
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||||
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<h2 class="entry-hint-parent">Roasting coffee at home. ☕
|
||||
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|
||||
</header>
|
||||
<div class="entry-content">
|
||||
<p>I, like many others, picked up a new hobby during the pandemic. Other people’s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID. Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter. My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home.
|
||||
...</p>
|
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<footer class="entry-footer"><span title='2022-07-14 00:00:00 +0000 UTC'>Thursday, July 14, 2022</span> · 4 min · Zachary Billman</footer>
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<a class="entry-link" aria-label="post link to Roasting coffee at home. ☕" href="https://www.zacharybillman.com/posts/roasting-coffee-at-home/"></a>
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|
||||
|
||||
<article class="post-entry">
|
||||
<header class="entry-header">
|
||||
<h2 class="entry-hint-parent">Using RSS feeds to keep on top of science.
|
||||
</h2>
|
||||
</header>
|
||||
<div class="entry-content">
|
||||
<p>It is an age-old question: how can one keep up with the continuous output of science? I remember at the beginning of my PhD struggling to figure out how anyone found out when a new paper came out. 😵 Did they sit on nature.com and spam the refresh button? Did they know when each journal released their latest issue?
|
||||
Behold the power of RSS! Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). Mine has one right here! These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you.
|
||||
...</p>
|
||||
</div>
|
||||
<footer class="entry-footer"><span title='2022-07-13 00:00:00 +0000 UTC'>Wednesday, July 13, 2022</span> · 3 min · Zachary Billman</footer>
|
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<a class="entry-link" aria-label="post link to Using RSS feeds to keep on top of science." href="https://www.zacharybillman.com/posts/rss-feeds-to-find-science-papers/"></a>
|
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</article>
|
||||
|
||||
<article class="post-entry">
|
||||
<header class="entry-header">
|
||||
<h2 class="entry-hint-parent">My selfhosting journey.
|
||||
</h2>
|
||||
</header>
|
||||
<div class="entry-content">
|
||||
<p>My interest in self-hosting began in my with my interests in internet privacy. Plastered all over the internet are stories about how much Google, Facebook and Amazon know about you. I deleted my Facebook account years ago, and I’m too paranoid to go back to the site because there’s a real possibility that Facebook has cached my account, ready to spin it back up in case I try to login again. The ads served to me were too accurate for my liking. This is despite almost never clicking on them! I have become convinced of the idea that, if you are not paying for the product, you are the product. From this assumption, it follows that anywhere I trust with my data that I am not paying for (like Google Drive, Google Photos, Dropbox, Facebook, Twitter) is using my data to earn money. We know that Google uses the labels you add to Photos to train it’s AI, and Facebook uses (at least) Instagram photos to train it’s AI. For some, the value proposition of allowing a company to use your data for a useful service in return is an acceptable one. I find this to be a reasonable stance, but I took my growing interest in internet privacy as a chance to learn about how I can take control of my data.
|
||||
...</p>
|
||||
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|
||||
<footer class="entry-footer"><span title='2022-07-02 00:00:00 +0000 UTC'>Saturday, July 2, 2022</span> · 5 min · Zachary Billman</footer>
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<a class="entry-link" aria-label="post link to My selfhosting journey." href="https://www.zacharybillman.com/posts/my-selfhosting-journey/"></a>
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</article>
|
||||
|
||||
<article class="post-entry">
|
||||
<header class="entry-header">
|
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<h2 class="entry-hint-parent">What I'm currently selfhosting.
|
||||
</h2>
|
||||
</header>
|
||||
<div class="entry-content">
|
||||
<p>N.B.: I hope to add screenshots for each of these eventually. For now, I hope links to each services’ website will suffice.
|
||||
Seafile
|
||||
This is a great tool for managing files. I moved to this from Nextcloud because I am of the philosophy that I would prefer services that do one thing excellently instead of many things well. Nextcloud is an incredible Office365 replacement, but I found myself using a fraction of what it was capable of providing. Enter Seafile. It is cloud file syncing with a robust encryption implementation, just what the doctor ordered.
|
||||
...</p>
|
||||
</div>
|
||||
<footer class="entry-footer"><span title='2022-07-02 00:00:00 +0000 UTC'>Saturday, July 2, 2022</span> · 6 min · Zachary Billman</footer>
|
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<a class="entry-link" aria-label="post link to What I'm currently selfhosting." href="https://www.zacharybillman.com/posts/zpb-current-selfhosted/"></a>
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</article>
|
||||
|
||||
<article class="post-entry">
|
||||
<header class="entry-header">
|
||||
<h2 class="entry-hint-parent">The (un)common yellowthroat.
|
||||
</h2>
|
||||
</header>
|
||||
<div class="entry-content">
|
||||
<p>My partner and I took a trip to the Mason Farm Biological Reserve the other day, and what a glorious day it was. This year, I’ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.
|
||||
I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I’m glad I did, because I got the best look at a common yellowthroat I’ve ever had. Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their iconic call. I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake.
|
||||
...</p>
|
||||
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|
||||
<footer class="entry-footer"><span title='2022-05-01 00:00:00 +0000 UTC'>Sunday, May 1, 2022</span> · 2 min · Zachary Billman</footer>
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<a class="entry-link" aria-label="post link to The (un)common yellowthroat." href="https://www.zacharybillman.com/posts/the-uncommon-yellowthroat/"></a>
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Normal file
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|
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<description><h2 id="welcome-to-my-site">Welcome to my site!</h2>
|
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<p>My name is Zachary Billman. I&rsquo;m an MD-PhD student at UNC Chapel Hill in Ed Miao&rsquo;s lab. The curious reader may be thinking: &ldquo;But Zach, Ed Miao&rsquo;s lab is at Duke now! What does that make you?&rdquo; What an astute question! I am a card-carrying UNC Microbiology and Immunology student who happens to have all of their research take place at Duke.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
This move was quite a trial, especially when compounded with the onset of the pandemic. I suspect my research timeline suffered, though this is an extremely minor inconvenience compared to the tragedy the pandemic caused.
|
||||
</small></span>
|
||||
This makes for very interesting basketball viewing parties with my Duke friends!</p></description>
|
||||
</item>
|
||||
<item>
|
||||
<title>Roasting coffee at home. ☕</title>
|
||||
<link>https://www.zacharybillman.com/posts/roasting-coffee-at-home/</link>
|
||||
<pubDate>Thu, 14 Jul 2022 00:00:00 +0000</pubDate>
|
||||
<guid>https://www.zacharybillman.com/posts/roasting-coffee-at-home/</guid>
|
||||
<description><p>I, like many others, picked up a new hobby during the pandemic. Other people&rsquo;s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
Dare I say that I did this before it was cool? &#x1f60e; I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it&rsquo;s been a while since I brought out the ole&rsquo; starter.
|
||||
</small></span>
|
||||
My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I&rsquo;ve started roasting my own coffee at home.</p></description>
|
||||
</item>
|
||||
<item>
|
||||
<title>Using RSS feeds to keep on top of science.</title>
|
||||
<link>https://www.zacharybillman.com/posts/rss-feeds-to-find-science-papers/</link>
|
||||
<pubDate>Wed, 13 Jul 2022 00:00:00 +0000</pubDate>
|
||||
<guid>https://www.zacharybillman.com/posts/rss-feeds-to-find-science-papers/</guid>
|
||||
<description><p>It is an age-old question: how can one keep up with the continuous output of science? I remember at the beginning of my PhD struggling to figure out how anyone found out when a new paper came out. &#x1f635; Did they sit on nature.com and spam the refresh button? Did they know when each journal released their latest issue?</p>
|
||||
<h2 id="behold-the-power-of-rss">Behold the power of RSS!</h2>
|
||||
<p>Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). <a href="https://zacharybillman.com/index.xml">Mine has one right here!</a> These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you.</p></description>
|
||||
</item>
|
||||
<item>
|
||||
<title>My selfhosting journey.</title>
|
||||
<link>https://www.zacharybillman.com/posts/my-selfhosting-journey/</link>
|
||||
<pubDate>Sat, 02 Jul 2022 00:00:00 +0000</pubDate>
|
||||
<guid>https://www.zacharybillman.com/posts/my-selfhosting-journey/</guid>
|
||||
<description><p>My interest in self-hosting began in my with my interests in internet privacy. Plastered all over the internet are stories about how much Google, Facebook and Amazon know about you. I deleted my Facebook account years ago, and I&rsquo;m too paranoid to go back to the site because there&rsquo;s <a href="https://www.reddit.com/r/privacy/comments/6nmjfh/facebook_account_fully_recovered_3_years_after/">a real possibility that Facebook has cached my account, ready to spin it back up</a> in case I try to login again. The ads served to me were too accurate for my liking.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
This is despite almost never clicking on them!
|
||||
</small></span>
|
||||
I have become convinced of the idea that, if you are not paying for the product, you are the product. From this assumption, it follows that anywhere I trust with my data that I am not paying for (like Google Drive, Google Photos, Dropbox, Facebook, Twitter) is using my data to earn money. We know that <a href="https://www.theverge.com/2020/11/11/21559930/google-train-ai-photos-image-labelling-app-android-update">Google uses the labels you add to Photos to train it&rsquo;s AI</a>, and <a href="https://ai.facebook.com/blog/seer-the-start-of-a-more-powerful-flexible-and-accessible-era-for-computer-vision/">Facebook uses (at least) Instagram photos to train it&rsquo;s AI</a>. For some, the value proposition of allowing a company to use your data for a useful service in return is an acceptable one. I find this to be a reasonable stance, but I took my growing interest in internet privacy as a chance to learn about how I can take control of my data.</p></description>
|
||||
</item>
|
||||
<item>
|
||||
<title>What I'm currently selfhosting.</title>
|
||||
<link>https://www.zacharybillman.com/posts/zpb-current-selfhosted/</link>
|
||||
<pubDate>Sat, 02 Jul 2022 00:00:00 +0000</pubDate>
|
||||
<guid>https://www.zacharybillman.com/posts/zpb-current-selfhosted/</guid>
|
||||
<description><p><em>N.B.: I hope to add screenshots for each of these eventually. For now, I hope links to each services&rsquo; website will suffice.</em></p>
|
||||
<ol>
|
||||
<li>
|
||||
<p><a href="https://www.seafile.com/en/home/">Seafile</a></p>
|
||||
<p>This is a great tool for managing files. I moved to this from Nextcloud because I am of the philosophy that I would prefer services that do one thing excellently instead of many things well. Nextcloud is an incredible Office365 replacement, but I found myself using a fraction of what it was capable of providing. Enter Seafile. It is cloud file syncing with a robust encryption implementation, just what the doctor ordered.</p></description>
|
||||
</item>
|
||||
<item>
|
||||
<title>The (un)common yellowthroat.</title>
|
||||
<link>https://www.zacharybillman.com/posts/the-uncommon-yellowthroat/</link>
|
||||
<pubDate>Sun, 01 May 2022 00:00:00 +0000</pubDate>
|
||||
<guid>https://www.zacharybillman.com/posts/the-uncommon-yellowthroat/</guid>
|
||||
<description><p>My partner and I took a trip to the <a href="https://ncbg.unc.edu/visit/mason-farm-biological-reserve/">Mason Farm Biological Reserve</a> the other day, and what a glorious day it was. This year, I&rsquo;ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.</p>
|
||||
<p>I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I&rsquo;m glad I did, because I got the best look at a common yellowthroat I&rsquo;ve ever had.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their <a href="https://ebird.org/species/comyel#Modal-playlist">iconic call</a>.
|
||||
</small></span>
|
||||
I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake.</p></description>
|
||||
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|
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</channel>
|
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|
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<title>Roasting coffee at home. ☕ | Zachary Billman</title>
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<meta name="description" content="I, like many others, picked up a new hobby during the pandemic. Other people’s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID.
|
||||
|
||||
Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter.
|
||||
|
||||
My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home.">
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<meta property="og:description" content="I, like many others, picked up a new hobby during the pandemic. Other people’s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID.
|
||||
|
||||
Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter.
|
||||
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My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home." />
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|
||||
|
||||
Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter.
|
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My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home."/>
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"articleBody": "I, like many others, picked up a new hobby during the pandemic. Other people’s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID. Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter. My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home.\nI’m not sure where this idea was planted into my brain. I don’t think I know anyone who roasts their own beans, and I certainly didn’t know how. I didn’t even drink coffee regularly until after college! I guess that extra time on the computer sent me down a rabbithole I have yet to emerge from.\nFirst, I want to preface the following with a disclaimer: This is not a detailed guide about how to roast your own coffee. If you are interested, I recommend checking out the How To Roast Your Own Coffee guide at Sweet Maria’s as a starting point. There is also the /r/roasting subreddit if that is your cup of tea. My only warning is there will be a lot of smoke. Roast your coffee outside, for Pete’s sake!\nIt all started with a trusty popcorn popper. There are a few things you want when you roast coffee:\nAir hot enough to roast coffee Remove the chaff from the beans Turns out that a classic popcorn popper fits the bill, as long as it has an upwards airflow and doesn’t let the chaff fall into the heating element. There is a bit of a cult following for the West Bend Poppery 2 model, but that one seemed a bit pricey, so I settled for a very capable popper from Nostalgia.\nFigure 1: I got a good bit of milage out of my popcorn popper. If you are interested in roasting your own coffee I would give it a whirl.\nThings were simple back then. I still bought most of the coffee I drank, but I roasted enough to enjoy some freshly roasted coffee as an occasional treat. I ordered 10 pounds of green beans from Sweet Maria’s and life was good.\nThen I became a bit of a coffee snob.\nI could only roast 100 grams of coffee at a time in the popcorn popper, which is only enough for one pot of coffee in the morning for me. So it was time to upgrade.\nI bought the SR800 fluid bed roaster, which upped my roasting capacity and gave me finer control on temperature and airflow. Suffice to say my roasts improved a lot! At this point, I would consider my coffee good enough to sell at a farmer’s market to break even.\nIf you ever find yourself on a coffee roasting forum and bring up the SR800, someone is bound to bring up the famous RazzoRoasting extension tube. If you look for advice for how to use the SR800, I swear it’s assumed that you have this very specific accessory. …And so I bought one.\nDon’t worry, that is the extent of all of my coffee spending (for now). I am a very satisfied coffee roaster now. Check out this quick series of images going from the green beans to a nearly finished product! I can spend about 45 minutes and go from nothing to nearly 2 pounds of roasted beans, enough for about a week and a half of coffee. Not bad! The only downside is that now I feel like I need to buy coffee from local roasters to get my fix. There are certainly crueler fates.\nAs a sign off, I will share something that surprised me about coffee roasting. When I roast coffee, the most important cue to determine if the coffee is roasted is the sound. That’s right, not the color, not the smell, but the sound. When heating up a coffee bean, the water trapped inside eventually bursts out of the bean in a rapid expansion. This is called “first crack”, and indicates that the coffee is roasted enough to be drinkable. The expansion also releases the chaff from the bean. If you continue heating up the bean, you will eventually reach “second crack”. I think a solid medium roast is taken out just before second crack, so I try to take my coffee out to this point and it hasn’t proved me wrong yet.\nHappy coffee-ing! ☕\n",
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<div class="breadcrumbs"><a href="https://www.zacharybillman.com/">Home</a> » <a href="https://www.zacharybillman.com/posts/">Posts</a></div>
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<h1 class="post-title entry-hint-parent">
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Roasting coffee at home. ☕
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<div class="post-meta"><span title='2022-07-14 00:00:00 +0000 UTC'>Thursday, July 14, 2022</span> · 4 min · Zachary Billman
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<div class="post-content"><p>I, like many others, picked up a new hobby during the pandemic. Other people’s hobbies may bring them joy. This could be for many reasons. There is the joy of creating something from scratch. You can revel in your thriftiness. You can embrace the pride when you recognize that your creation is on par (or better!) than what you can buy. I feel like these are embodied in the sourdough craze that caught fire early on in COVID.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
Dare I say that I did this before it was cool? 😎 I baked two loaves of bread almost every weekend through med school. Maybe I should bring that back, it’s been a while since I brought out the ole’ starter.
|
||||
</small></span>
|
||||
My pandemic hobby is similar, but different in that it often feels like a chore, costs more money, and often turns out worse than what I can buy. Of course, I am talking about how I’ve started roasting my own coffee at home.</p>
|
||||
<p>I’m not sure where this idea was planted into my brain. I don’t think I know anyone who roasts their own beans, and I certainly didn’t know how. I didn’t even drink coffee regularly until after college! I guess that extra time on the computer sent me down a rabbithole I have yet to emerge from.</p>
|
||||
<p>First, I want to preface the following with a disclaimer: This is not a detailed guide about how to roast your own coffee. If you are interested, I recommend checking out the <a href="https://library.sweetmarias.com/how-to-roast-your-own-coffee/">How To Roast Your Own Coffee guide at Sweet Maria’s</a> as a starting point. There is also the /r/roasting subreddit if that is your cup of tea. My only warning is <strong>there will be a lot of smoke</strong>. Roast your coffee outside, for Pete’s sake!</p>
|
||||
<p>It all started with a trusty popcorn popper. There are a few things you want when you roast coffee:</p>
|
||||
<ol>
|
||||
<li>Air hot enough to roast coffee</li>
|
||||
<li>Remove the chaff from the beans</li>
|
||||
</ol>
|
||||
<p>Turns out that a classic popcorn popper fits the bill, as long as it has an upwards airflow and doesn’t let the chaff fall into the heating element. There is a bit of a cult following for the <a href="https://www.ebay.com/sch/i.html?_from=R40&_trksid=p2334524.m570.l1313&_nkw=west+bend+poppery+ii+82102&_sacat=0&LH_TitleDesc=0&_odkw=west+bend+poppery+ii+82102&_osacat=0">West Bend Poppery 2 model</a>, but that one seemed a bit pricey, so I settled for <a href="https://nostalgiaproducts.com/collections/popcorn/products/aph200red">a very capable popper from Nostalgia</a>.</p>
|
||||
<figure><a href="./images/popcorn-popper.webp">
|
||||
<img loading="lazy" src="./images/popcorn-popper.webp"
|
||||
alt="Figure 1: I got a good bit of milage out of my popcorn popper. If you are interested in roasting your own coffee I would give it a whirl."/> </a><figcaption>
|
||||
<p><span class="figure-number">Figure 1: </span>I got a good bit of milage out of my popcorn popper. If you are interested in roasting your own coffee I would give it a whirl.</p>
|
||||
</figcaption>
|
||||
</figure>
|
||||
|
||||
<p>Things were simple back then. I still bought most of the coffee I drank, but I roasted enough to enjoy some freshly roasted coffee as an occasional treat. I ordered 10 pounds of green beans from Sweet Maria’s and life was good.</p>
|
||||
<p>Then I became a bit of a coffee snob.</p>
|
||||
<p>I could only roast 100 grams of coffee at a time in the popcorn popper, which is only enough for one pot of coffee in the morning for me. So it was time to upgrade.</p>
|
||||
<p>I bought the <a href="https://www.sweetmarias.com/fresh-roast-sr800.html">SR800 fluid bed roaster</a>, which upped my roasting capacity and gave me finer control on temperature and airflow. Suffice to say my roasts improved a lot! At this point, I would consider my coffee good enough to sell at a farmer’s market to break even.</p>
|
||||
<p>If you ever find yourself on a coffee roasting forum and bring up the SR800, someone is bound to bring up the <a href="https://www.etsy.com/shop/RazzoRoasting?ref=simple-shop-header-name&listing_id=1105001328">famous RazzoRoasting extension tube</a>. If you look for advice for how to use the SR800, I swear it’s assumed that you have this very specific accessory. …And so I bought one.</p>
|
||||
<p>Don’t worry, that is the extent of all of my coffee spending (for now). I am a very satisfied coffee roaster now. Check out this quick series of images going from the green beans to a nearly finished product! I can spend about 45 minutes and go from nothing to nearly 2 pounds of roasted beans, enough for about a week and a half of coffee. Not bad! The only downside is that now I feel like I need to buy coffee from local roasters to get my fix. There are certainly crueler fates.</p>
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<p>As a sign off, I will share something that surprised me about coffee roasting. When I roast coffee, the most important cue to determine if the coffee is roasted is the <em>sound</em>. That’s right, not the color, not the smell, but the sound. When heating up a coffee bean, the water trapped inside eventually bursts out of the bean in a rapid expansion. This is called “first crack”, and indicates that the coffee is roasted enough to be drinkable. The expansion also releases the chaff from the bean. If you continue heating up the bean, you will eventually reach “second crack”. I think a solid medium roast is taken out just before second crack, so I try to take my coffee out to this point and it hasn’t proved me wrong yet.</p>
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<meta name="description" content="It is an age-old question: how can one keep up with the continuous output of science? I remember at the beginning of my PhD struggling to figure out how anyone found out when a new paper came out. 😵 Did they sit on nature.com and spam the refresh button? Did they know when each journal released their latest issue?
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Behold the power of RSS!
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Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). Mine has one right here! These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you.">
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|
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Behold the power of RSS!
|
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Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). Mine has one right here! These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you." />
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|
||||
Behold the power of RSS!
|
||||
Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). Mine has one right here! These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you."/>
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<h1 class="post-title entry-hint-parent">
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Using RSS feeds to keep on top of science.
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<div class="post-meta"><span title='2022-07-13 00:00:00 +0000 UTC'>Wednesday, July 13, 2022</span> · 3 min · Zachary Billman
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<div class="post-content"><p>It is an age-old question: how can one keep up with the continuous output of science? I remember at the beginning of my PhD struggling to figure out how anyone found out when a new paper came out. 😵 Did they sit on nature.com and spam the refresh button? Did they know when each journal released their latest issue?</p>
|
||||
<h2 id="behold-the-power-of-rss">Behold the power of RSS!<a hidden class="anchor" aria-hidden="true" href="#behold-the-power-of-rss">#</a></h2>
|
||||
<p>Most websites have a page that contains information about each subpage in a computer-readable format called RSS (Really Simple Syndication). <a href="https://zacharybillman.com/index.xml">Mine has one right here!</a> These pages can be parsed by a number of RSS feed aggregators. The way these pages are set up make it such that they add any new information hosted at that domain. This is useful in the science world because you can find the RSS feed of a given journal, subscribe to it, then have every new article published online be delivered right to you.</p>
|
||||
<p>There are a plethora of RSS feed aggregators you can pick from manage your feeds. I have previously used <a href="https://feedly.com/">Feedly</a> and <a href="https://www.inoreader.com/">Inoreader</a>, which are great free solutions, but have moved on to selfhosting my own instance of <a href="https://www.freshrss.org/">FreshRSS</a>.</p>
|
||||
<p>After making an account at your friendly local RSS feed aggregator, you can add whatever feeds your heart desires. To find a journal’s rss feed, I often just search “$JOURNAL_NAME rss feed” and poke around until I find something that looks right. Most of the aggregators will test the feed out first to make sure that you are trying to add a legitimate one. Here are a few of the heavy hitters to get you started:</p>
|
||||
<ol>
|
||||
<li><a href="http://feeds.nature.com/nature/rss/current">http://feeds.nature.com/nature/rss/current</a></li>
|
||||
<li><a href="https://www.science.org/rss/express.xml">https://www.science.org/rss/express.xml</a></li>
|
||||
<li><a href="https://www.cell.com/cell/inpress.rss">https://www.cell.com/cell/inpress.rss</a></li>
|
||||
</ol>
|
||||
<p>Nothing like a constant stream of Cell, Science, and Nature to make your project feel like a real winner, eh?</p>
|
||||
<p>Here is what my own site looks like.</p>
|
||||
<p><a id="figure--feed1"></a></p>
|
||||
<figure><a href="./images/feed1.webp">
|
||||
<img loading="lazy" src="./images/feed1.webp"
|
||||
alt="Figure 1: My current FreshRSS setup. On the left I have my feeds separated into folders. In the middle you can see the titles of papers that appear in my feed."/> </a><figcaption>
|
||||
<p><span class="figure-number">Figure 1: </span>My current FreshRSS setup. On the left I have my feeds separated into folders. In the middle you can see the titles of papers that appear in my feed.</p>
|
||||
</figcaption>
|
||||
</figure>
|
||||
|
||||
<p>And after I hit <code>J</code> to move to the first item in the feed.</p>
|
||||
<p><a id="figure--feed2"></a></p>
|
||||
<figure><a href="./images/feed2.webp">
|
||||
<img loading="lazy" src="./images/feed2.webp"
|
||||
alt="Figure 2: With a title selected, you can see the abstract and authors."/> </a><figcaption>
|
||||
<p><span class="figure-number">Figure 2: </span>With a title selected, you can see the abstract and authors.</p>
|
||||
</figcaption>
|
||||
</figure>
|
||||
|
||||
<p>After collecting all of your desired RSS feeds, you cannot forego your responsibility of actually reading them! Most RSS feed aggregators have shortcuts to move through titles quickly (Typically <code>J</code> to move on to the next one and <code>K</code> to move up.)
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
They always seem to use <a href="https://hea-www.harvard.edu/~fine/Tech/vi.html">vi keybindings</a>. A bunch of computer nerds have really cornered the keybinding market. I have let them take over my computing life.
|
||||
</small></span>
|
||||
Each morning when I get into the lab, I quickly set up something, then head to my desk to hit <code>J</code> until the counter reaches zero.</p>
|
||||
<h2 id="but-what-about-my-very-specific-field">But what about my very specific field?<a hidden class="anchor" aria-hidden="true" href="#but-what-about-my-very-specific-field">#</a></h2>
|
||||
<p>You can subscribe to all of the journals you want, but that doesn’t make the papers with your specific interests pop out. Fortunately, the NIH has this <em>exact</em> circumstance in mind.</p>
|
||||
<p>When you make a new search on PubMed you might notice the “Create RSS” button. Give it a click, then you will have a personal link you can add to your favorite RSS feed aggregator.</p>
|
||||
<p><a id="figure--feed3"></a></p>
|
||||
<figure><a href="./images/feed3.webp">
|
||||
<img loading="lazy" src="./images/feed3.webp"
|
||||
alt="Figure 3: Somehow I never noticed this button until I needed it."/> </a><figcaption>
|
||||
<p><span class="figure-number">Figure 3: </span>Somehow I never noticed this button until I needed it.</p>
|
||||
</figcaption>
|
||||
</figure>
|
||||
|
||||
<p>This changed the game for me for keeping up with papers. Unfortunately, it doesn’t solve the problem of library management, or actually getting around to reading the papers you care about. I will leave library management as an exercise for the interested reader.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
Here’s a tip, the best solution uses the <a href="https://www.zotero.org/">Zotero citation manager</a>. Bonus points for using <a href="http://zotfile.com/">Zotfile for renaming your PDFs</a> and <a href="https://retorque.re/zotero-better-bibtex/">Better BibTex for Zotero</a>. 😉
|
||||
</small></span>
|
||||
I hope this helps you get your eyeballs on that science you crave. If you have solved the problem of accruing papers to read faster than you read them, let me know.</p>
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<title>The (un)common yellowthroat. | Zachary Billman</title>
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<meta name="description" content="My partner and I took a trip to the Mason Farm Biological Reserve the other day, and what a glorious day it was. This year, I’ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.
|
||||
I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I’m glad I did, because I got the best look at a common yellowthroat I’ve ever had.
|
||||
|
||||
Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their iconic call.
|
||||
|
||||
I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake.">
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<meta property="og:description" content="My partner and I took a trip to the Mason Farm Biological Reserve the other day, and what a glorious day it was. This year, I’ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.
|
||||
I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I’m glad I did, because I got the best look at a common yellowthroat I’ve ever had.
|
||||
|
||||
Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their iconic call.
|
||||
|
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I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake." />
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<meta name="twitter:description" content="My partner and I took a trip to the Mason Farm Biological Reserve the other day, and what a glorious day it was. This year, I’ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.
|
||||
I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I’m glad I did, because I got the best look at a common yellowthroat I’ve ever had.
|
||||
|
||||
Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their iconic call.
|
||||
|
||||
I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake."/>
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<h1 class="post-title entry-hint-parent">
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The (un)common yellowthroat.
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<div class="post-meta"><span title='2022-05-01 00:00:00 +0000 UTC'>Sunday, May 1, 2022</span> · 2 min · Zachary Billman
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<div class="post-content"><p>My partner and I took a trip to the <a href="https://ncbg.unc.edu/visit/mason-farm-biological-reserve/">Mason Farm Biological Reserve</a> the other day, and what a glorious day it was. This year, I’ve been quite busy in the lab, and missed a lot of the early spring warbler season, so I was very excited by the opportunity to check out the old stomping grounds.</p>
|
||||
<p>I brought the camera with me despite the fact we were going to be there around midday when the birds are much less active. I’m glad I did, because I got the best look at a common yellowthroat I’ve ever had.
|
||||
<span class="sidenote-number"><small class="sidenote">
|
||||
Normally these guys are flighty, staying close to the ground in small brush or tall grasses, but this one was putting on a proper show for the mating season. Even when you get a glimpse of one, it is usually just that, as they have jumped away before you can pull out the camera, taunting you with their <a href="https://ebird.org/species/comyel#Modal-playlist">iconic call</a>.
|
||||
</small></span>
|
||||
I was very pleased to capture a few choice shots of the bird. Hopefully there are more to come. While we were out, I also got a nice picture of a hermit thrush and a king snake.</p>
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||||
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|
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|
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|
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||||
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||||
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||||
|
||||
|
||||
|
||||
|
||||
>
|
||||
</a>
|
||||
</div>
|
||||
|
||||
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<script>
|
||||
if (!("HSCGjQuery" in window)) {
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if (!window.jQuery) {
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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gallery.justifiedGallery($.extend(
|
||||
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|
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|
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|
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|
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||||
|
||||
|
||||
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|
||||
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|
||||
|
||||
<p>These images have been compressed quite a bit for a lighter internet footprint. These have all been resized to 25% of their original size. If you would like the full sized images, let me know and I will send you a link!</p>
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409
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File diff suppressed because one or more lines are too long
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